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Integrated Genomics

The Integrated Genomics Shared Resource in the Georgia Cancer Center offer cutting edge technologies for DNA and RNA sequencing as well as spatial transcriptomic.​

We offer a wide range of services from sample processing from both fresh and frozen, as well as fixed cells or tissues to library preparation and next-generation sequencing (NGS) for bulk DNA/RNA sequencing and single-cell/nuclei sequencing. For single-cell studies, we are equipped with the Chromium X system from 10X Genomics. Our sequencing capabilities include the Illumina Novaseq6000 and NextSeq 500. We recently introduce single cell spatial transcriptomics with CosMx SMI platform been able to provide support to investigator that are focusing on single cell in tissue in a specific microenvironment. We are also equipped with CytAssit instrument from 10X genomics for VISIUM spatial transcriptomic. For nucleic acid and protein extraction we are equipped with QIAConnect from Qiagen.

For more information please see the Integrated Genomics Additional Info on the Shared Resources page.

Jump to: Equipment & ServicesWhat We OfferContact Us

Contact Us

Genomics Core GCC

CN3156 E & F Labs

(706) 721-5471

Genomics Core GCC

Equipment & Services

Users are responsible for knowing how to run the equipment and what products and sample preparation to use.

All services are booked through iLAB

What We Offer

DNA Sequencing (inquire for more information)

E-mail for more information

Chip-Seq & Whole Transcriptome Seq

Read about chip sequencing and whole Transcriptome Sequencing.Chip-Seq & Whole Transcriptome Seq

miRNA (inquire for more information)

E-mail for more information

RNA-SeQ High & Low Input

For high input RNA we can work with a minim of 300ng of RNA & for the low input we can work with a minim of 25pg or 100 to 1000cell skipping RNA isolation.RNA-SeQ High & Low Input

Sample Purification

QIAcube Connect is designed to perform fully automated purification of nucleic acids and proteins in molecular biology applications. The system is intended for use by professional users trained in molecular biological techniques and the operation of QIAcube Connect.Sample Purification

Sequencing Capabilities

About the NovaSeq 6000 SystemSequencing Capabilities

Spatial Transcriptomic

Our currently has two different platforms that enable spatially resolved profiling. These are the Visium – 10X Genomics and the CosMx Spatial Molecular Imager (CosMx SMI) – Nanostring. More information below.Spatial Transcriptomic

Single Cell

The Chromium X Series instrument enables seamless scaling from pilot experiments through million-cell studies, and offers compatibility with an expanding range of Chromium Single Cell applications. This includes Single Cell Gene Expression Flex kits, which enable the most sensitive whole transcriptome profiling of fresh, frozen, and FFPE samples.Single Cell

Trainings (inquire for more information)

E-mail for more information

Quality Control Analysis

Information about our Agilent 2100 Bio analyzer, Agilent 2200 TapeStation, Qubit Fluorometer, NandoDrop 1000Quality Control Analysis

Contact Us

photo of Martina Zoccheddu, MS

Martina Zoccheddu, MS

  • Director | CN 3305

(706) 721-5471

mzoccheddu@augusta.edu

photo of Miao Yu, PhD

Miao Yu, PhD

  • Research Manager | CN 3162

(706) 721-5471

miyu@augusta.edu

photo of Sahiti Sri Manam, MS

Sahiti Sri Manam, MS

  • Research Associate | CN 3162

(706) 721-5471

samanam@augusta.edu

photo of Yali Zhu, PhD

Yali Zhu, PhD

  • Research Associate | CN 3162

(706) 721-5471

yazhu@augusta.edu

 

 

 

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